The Emory Integrated Proteomics Core (EIPC), one of the Emory Integrated Core Facilities (EICF), is supported by the Winship Cancer Institute, the Emory Neuroscience NINDS Core Facilities, the Atlanta Clinical & Translational Science Institute, and the Emory University School of Medicine. We are a full-service proteomics facility offering Emory researchers the ability to use the latest technologies in their research. Please contact us so that we can discuss your experimental needs.


The proteomic platform of the Core relies on LC-MS/MS to analyze peptide mixtures of single proteins as well as more complex proteomes captured from cells and tissues. The sensitivity and high throughput of the LC-MS/MS system is pivotal to proteomic analyses, and we have implemented several improvements to the basic nano-scale LC-MS/MS platform to increase the ability to detect small quantities of individual proteins and simultaneously to analyze very complex samples. These advances include: (i) a completely automated nanoLC-MS/MS system for the analysis of protein mixtures such that tens of thousands of MS/MS spectra can be acquired by the system over the course of several days without the need for substantive attention by lab personnel. (ii) Pre-fractionation of complex peptide mixtures using a variety of high performance chromatography methods, isoelectric focusing (IEF) or one-dimensional SDS gel.

By using LC-MS/MS and our bioinformatic pipelines, a number of both qualitative and quantitative proteomic services are provided. The combination of increased sensitivity or coverage of proteomes and multiple quantitative techniques available has significantly increased the value of this resource.

Service Highlights

LC/mass spectrometers

  • LTQ Orbitrap XL           (~4 peptides/s)
  • Q-Exactive Plus          (10 peptides/sec)
  • Orbitrap Fusion           (19 peptides/sec)


  • Protein identification
  • Post-translational modifications
  • Label and label-free quantification
  • Bioinformatic identification and analysis


Submit a project

The Emory Integrated Proteomics Core (EIPC) is one of the Emory Integrated Core Facilities (EICF). We use PPMS to provide access to our services and track your projects. Please click here if you need an account established for your use. 

PPMS - Access Services

Please click here to submit your project.

Frequently Asked Questions

Please click here to read our FAQs.

Still have questions?

Please email us at EIPC@emory.edu