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Chen KY, De Giovanni M, Xu Y, An J, Kirthivasan N, Lu E, Jiang K, Brooks S, Ranucci S, Yang J, Kanameishi S, Kabashima K, Brulois K, Bscheider M, Butcher EC, Cyster JG. Inflammation switches the chemoattractant requirements for naive lymphocyte entry into lymph nodes. Cell. 2025 Feb 20;188(4):1019-1035.e22. doi: 10.1016/j.cell.2024.11.031. Epub 2024 Dec 20. PMID: 39708807; PMCID: PMC11845304.

Xiao C, Peng G, Conneely KN, Zhao H, Felger JC, Wommack EC, Higgins KA, Shin DM, Saba NF, Bruner DW, Miller AH. DNA methylation profiles of cancer-related fatigue associated with markers of inflammation and immunometabolism. Mol Psychiatry. 2025 Jan;30(1):76-83. doi: 10.1038/s41380-024-02652-z. Epub 2024 Jul 9. PMID: 38977918.

Lin, F, Lin, S, Wang, J, Sellers, J, Chrenek, M, Nickerson, J, Boatright, J, Geisert, E. An improved method of transducing retinal canglion cells using AAV via transpupillary injection in adult mouse eyes. Molecular Vision. 2025 Jan 12; 31:1-9. http://www.molvis.org/molvis/v31/1.

Koo J, Seong CS, Parker RE, Herrera A, Dwivedi B, Arthur RA, Dinasarapu AR, Johnston HR, Claussen H, Tucker-Burden C, Ramalingam SS, Fu H, Zhou W, Marcus AI, Gilbert-Ross M. Live-Cell Invasive Phenotyping Uncovers ALK2 as a Therapeutic Target in LKB1-Mutant Lung Cancer. Cancer Res. 2024 Nov 15;84(22):3761-3771. doi: 10.1158/0008-5472.CAN-23-2631. PMID: 39207369; PMCID: PMC11565166.

Bai J, Eldridge R, Houser M, Martin M, Powell C, Sutton KS, Noh HI, Wu Y, Olson T, Konstantinidis KT, Bruner DW. Multi-omics analysis of the gut microbiome and metabolites associated with the psychoneurological symptom cluster in children with cancer receiving chemotherapy. J Transl Med. 2024 Mar 9;22(1):256. doi: 10.1186/s12967-024-05066-1. PMID: 38461265; PMCID: PMC10924342.

Eggert J, Zinzow-Kramer WM, Hu Y, Kolawole EM, Tsai YL, Weiss A, Evavold BD, Salaita K, Scharer CD, Au-Yeung BB. Cbl-b mitigates the responsiveness of naive CD8+ T cells that experience extensive tonic T cell receptor signaling. Sci Signal. 2024 Feb 6;17(822):eadh0439. doi: 10.1126/scisignal.adh0439. Epub 2024 Feb 6. PMID: 38319998; PMCID: PMC10897907.

Uddbäck I, Michalets SE, Saha A, Mattingly C, Kost KN, Williams ME, Lawrence LA, Hicks SL, Lowen AC, Ahmed H, Thomsen AR, Russell CJ, Scharer CD, Boss JM, Koelle K, Antia R, Christensen JP, Kohlmeier JE. Prevention of respiratory virus transmission by resident memory CD8+ T cells. Nature. 2024 Feb;626(7998):392-400. doi: 10.1038/s41586-023-06937-1. Epub 2023 Dec 12. PMID: 38086420; PMCID: PMC11040656.

Lin Y, Peng G, Bruner DW, Miller AH, Saba NF, Higgins KA, Shin DM, Claussen H, Johnston HR, Houser MC, Wommack EC, Xiao C. Associations of differentially expressed genes with psychoneurological symptoms in patients with head and neck cancer: A longitudinal study. J Psychosom Res. 2023 Dec;175:111518. doi: 10.1016/j.jpsychores.2023.111518. Epub 2023 Oct 10. PMID: 37832274.

Damhorst GL, Fujita AW, Fitts E, Szabo B, Bowers HB, Sabino C, Ahmed A, Wang E, Piantadosi A, McLendon K, Sullivan J, Greenleaf M, McCaslin D, Palmore M, Anderson AM, Aldred B, Gunthel C, Martin GS, Colasanti JA, Lam WA, Bassit L, Rao A, Sheth AN, Titanji BK. Multisite mpox infection and viral dynamics among persons with HIV in metro-Atlanta. J Infect Dis. 2023 Nov 29:jiad530. doi: 10.1093/infdis/jiad530. Epub ahead of print. PMID: 38019187.

Moreno CS, Winham CL, Alemozaffar M, Klein ER, Lawal IO, Abiodun-Ojo OA, Patil D, Barwick BG, Huang Y, Schuster DM, Sanda MG, Osunkoya AO. Integrated Genomic Analysis of Primary Prostate Tumor Foci and Corresponding Lymph Node Metastases Identifies Mutations and Pathways Associated with Metastasis. Cancers (Basel). 2023 Nov 30;15(23):5671. doi: 10.3390/cancers15235671. PMID: 38067373; PMCID: PMC10705102.

Malawsky DS, Dismuke T, Liu H, Castellino E, Brenman J, Dasgupta B, Tikunov A, Gershon TR. Chronic AMPK inactivation slows SHH medulloblastoma progression by inhibiting mTORC1 signaling and depleting tumor stem cells. iScience. 2023 Nov 14;26(12):108443. doi: 10.1016/j.isci.2023.108443. PMID: 38094249; PMCID: PMC10716552.

Carmola LR, Roebling AD, Khosravi D, Langsjoen RM, Bombin A, Bixler B, Reid A, Chen C, Wang E, Lu Y, Zheng Z, Zhang R, Nguyen PV, Arthur RA, Fitts E, Gulick DA, Higginbotham D, Taz A, Ahmed A, Crumpler JH, Kraft C, Lam WA, Babiker A, Waggoner JJ, Openo KP, Johnson LM, Westbrook A, Piantadosi A. Viral and host factors associated with SARS-CoV-2 disease severity in Georgia, USA. medRxiv [Preprint]. 2023 Oct 25:2023.10.25.23297530. doi: 10.1101/2023.10.25.23297530. PMID: 37961729; PMCID: PMC10635197.

Xiao C, Fedirko V, Claussen H, Richard Johnston H, Peng G, Paul S, Maner-Smith KM, Higgins KA, Shin DM, Saba NF, Wommack EC, Bruner DW, Miller AH. Circulating short chain fatty acids and fatigue in patients with head and neck cancer: A longitudinal prospective study. Brain Behav Immun. 2023 Oct;113:432-443. doi: 10.1016/j.bbi.2023.07.025. Epub 2023 Aug 4. PMID: 37543249; PMCID: PMC10528227.

Rao A, Westbrook A, Bassit L, Parsons R, Fitts E, Greenleaf M, McLendon K, Sullivan JA, O'Sick W, Baugh T, Bowers HB, Frank F, Wang E, Le M, Frediani J, Roychoudhury P, Greninger AL, Jerris R, Pollock NR, Ortlund EA, Roback JD, Lam WA, Piantadosi A. Sensitivity of rapid antigen tests against SARS-CoV-2 Omicron and Delta variants. J Clin Microbiol. 2023 Oct 24;61(10):e0013823. doi: 10.1128/jcm.00138-23. Epub 2023 Sep 20. PMID: 37728https://pubmed.ncbi.nlm.nih.gov/37728336/336; PMCID: PMC10654096.

Kelvin JM, Chimenti ML, Zhang DY, Williams EK, Moore SG, Humber GM, Baxter TA, Birnbaum LA, Qui M, Zecca H, Thapa A, Jain J, Jui NT, Wang X, Fu H, Du Y, Kemp ML, Lam WA, Graham DK, DeRyckere D, Dreaden EC. Development of constitutively synergistic nanoformulations to enhance chemosensitivity in T-cell leukemia. J Control Release. 2023 Sep;361:470-482. doi: 10.1016/j.jconrel.2023.07.045. Epub 2023 Aug 14. PMID: 37543290; PMCID: PMC10544718.

Hong L, Williams NL, Jaffe M, Shields CE, Haynes KA. Synthetic Reader-Actuators Targeted to Polycomb-Silenced Genes Block Triple-Negative Breast Cancer Proliferation and Invasion. GEN Biotechnol. 2023 Aug 1;2(4):301-316. doi: 10.1089/genbio.2023.0020. Epub 2023 Aug 17. PMID: 37928406; PMCID: PMC10623628.

Sivasami P, Elkins C, Diaz-Saldana PP, Goss K, Peng A, Hamersky M 4th, Bae J, Xu M, Pollack BP, Horwitz EM, Scharer CD, Seldin L, Li C. Obesity-induced dysregulation of skin-resident PPARγ+ Treg cells promotes IL-17A-mediated psoriatic inflammation. Immunity. 2023 Aug 8;56(8):1844-1861.e6. doi: 10.1016/j.immuni.2023.06.021. Epub 2023 Jul 20. PMID: 37478855; PMCID: PMC10527179.

Koo J, Seong CS, Parker RE, Dwivedi B, Arthur RA, Dinasarapu AR, Johnston HR, Claussen H, Tucker-Burden C, Ramalingam SS, Fu H, Zhou W, Marcus AI, Gilbert-Ross M. Live-cell invasive phenotyping uncovers the ALK2/BMP6 iron homeostasis pathway as a therapeutic vulnerability in LKB1-mutant lung cancer. bioRxiv [Preprint]. 2023 Jun 14:2023.06.14.544941. doi: 10.1101/2023.06.14.544941. PMID: 37398244; PMCID: PMC10312689.

Zuo Z, Kania AK, Patterson DG, Hicks SL, Maurer J, Gupta M, Boss JM, Scharer CD. CRISPR/Cas9 editing reveals IRF8 regulated gene signatures restraining plasmablast differentiation. Heliyon. 2023 Jun 21;9(6):e17527. doi: 10.1016/j.heliyon.2023.e17527. PMID: 37416674; PMCID: PMC10320122.

Nguyen PV, Carmola LR, Wang E, Bassit L, Rao A, Greenleaf M, Sullivan JA, Martin GS, Lam WA, Waggoner JJ, Piantadosi A. SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 antigen self tests. J Clin Virol. 2023 May;162:105426. doi: 10.1016/j.jcv.2023.105426. Epub 2023 Mar 24. PMID: 37028004; PMCID: PMC10036152.

Geitgey DK, Lee M, Cottrill KA, Jaffe M, Pilcher W, Bhasin S, Randall J, Ross AJ, Salemi M, Castillo-Castrejon M, Kilgore MB, Brown AC, Boss JM, Johnston R, Fitzpatrick AM, Kemp ML, English R, Weaver E, Bagchi P, Walsh R, Scharer CD, Bhasin M, Chandler JD, Haynes KA, Wellberg EA, Henry CJ. The 'omics of obesity in B-cell acute lymphoblastic leukemia. J Natl Cancer Inst Monogr. 2023 May 4;2023(61):12-29. doi: 10.1093/jncimonographs/lgad014. PMID: 37139973; PMCID: PMC10157791.

Nellore A, Zumaquero E, Scharer CD, Fucile CF, Tipton CM, King RG, Mi T, Mousseau B, Bradley JE, Zhou F, Mutneja S, Goepfert PA, Boss JM, Randall TD, Sanz I, Rosenberg AF, Lund FE. A transcriptionally distinct subset of influenza-specific effector memory B cells predicts long-lived antibody responses to vaccination in humans. Immunity. 2023 Apr 11;56(4):847-863.e8. doi: 10.1016/j.immuni.2023.03.001. Epub 2023 Mar 22. PMID: 36958335; PMCID: PMC10113805.

Rose JR, Akdogan-Ozdilek B, Rahmberg AR, Powell MD, Hicks SL, Scharer CD, Boss JM. Distinct transcriptomic and epigenomic modalities underpin human memory T cell subsets and their activation potential. Commun Biol. 2023 Apr 3;6(1):363. doi: 10.1038/s42003-023-04747-9. PMID: 37012418; PMCID: PMC10070634.

Ware MB, Phillips M, McQuinn C, Zaidi MY, Knochelmann HM, Greene E, Robinson B, Herting CJ, Mace TA, Chen Z, Zhang C, Farren MR, Ruggieri AN, Bowers JS, Shakya R, Farris AB, Young G, Carson WE 3rd, El-Rayes B, Paulos CM, Lesinski GB. Dual IL-6 and CTLA-4 blockade regresses pancreatic tumors in a T cell- and CXCR3-dependent manner. JCI Insight. 2023 Apr 24;8(8):e155006. doi: 10.1172/jci.insight.155006. PMID: 36881480; PMCID: PMC10243806.

Qian DC, Ulrich BC, Peng G, Zhao H, Conneely KN, Miller AH, Bruner DW, Eldridge RC, Wommack EC, Higgins KA, Shin DM, Saba NF, Smith AK, Burtness B, Park HS, Stokes WA, Beitler JJ, Xiao C. Outcomes Stratification of Head and Neck Cancer Using Pre- and Post-treatment DNA Methylation From Peripheral Blood. Int J Radiat Oncol Biol Phys. 2023 Apr 1;115(5):1217-1228. doi: 10.1016/j.ijrobp.2022.11.009. Epub 2022 Nov 21. PMID: 36410685.

Richardson BN, Noh HI, Webster CI, Zhang W, Kim S, Yang I, Bai J. Oral Microbiome, Mental Health, and Sleep Outcomes During the COVID-19 Pandemic: An Observational Study in Chinese and Korean American Immigrants. OMICS. 2023 Apr;27(4):180-190. doi: 10.1089/omi.2022.0182. Epub 2023 Mar 22. PMID: 36946910; PMCID: PMC10122216.

Zhu L, Zhao Y, Liu T, Chen M, Qian WP, Jiang B, Barwick BG, Zhang L, Styblo TM, Li X, Yang L. Inhibition of NADPH Oxidase-ROS Signal using Hyaluronic Acid Nanoparticles for Overcoming Radioresistance in Cancer Therapy. ACS Nano. 2022 Nov 22;16(11):18708-18728. doi: 10.1021/acsnano.2c07440. Epub 2022 Oct 18. PMID: 36256454; PMCID: PMC9764083.

Lobby JL, Uddbäck I, Scharer CD, Mi T, Boss JM, Thomsen AR, Christensen JP, Kohlmeier JE. Persistent Antigen Harbored by Alveolar Macrophages Enhances the Maintenance of Lung-Resident Memory CD8+ T Cells. J Immunol. 2022 Nov 1;209(9):1778-1787. doi: 10.4049/jimmunol.2200082. Epub 2022 Sep 26. PMID: 36162870; PMCID: PMC9588742.

Rotolo L, Vanover D, Bruno NC, Peck HE, Zurla C, Murray J, Noel RK, O'Farrell L, Araínga M, Orr-Burks N, Joo JY, Chaves LCS, Jung Y, Beyersdorf J, Gumber S, Guerrero-Ferreira R, Cornejo S, Thoresen M, Olivier AK, Kuo KM, Gumbart JC, Woolums AR, Villinger F, Lafontaine ER, Hogan RJ, Finn MG, Santangelo PJ. Species-agnostic polymeric formulations for inhalable messenger RNA delivery to the lung. Nat Mater. 2022 Nov 28. doi: 10.1038/s41563-022-01404-0. Epub ahead of print. PMID: 36443576.

Kapoor-Vazirani P, Rath SK, Liu X, Shu Z, Bowen NE, Chen Y, Haji-Seyed-Javadi R, Daddacha W, Minten EV, Danelia D, Farchi D, Duong DM, Seyfried NT, Deng X, Ortlund EA, Kim B, Yu DS. SAMHD1 deacetylation by SIRT1 promotes DNA end resection by facilitating DNA binding at double-strand breaks. Nat Commun. 2022 Nov 7;13(1):6707. doi: 10.1038/s41467-022-34578-x. PMID: 36344525; PMCID: PMC9640623.

Hashimoto M, Araki K, Cardenas MA, Li P, Jadhav RR, Kissick HT, Hudson WH, McGuire DJ, Obeng RC, Wieland A, Lee J, McManus DT, Ross JL, Im SJ, Lee J, Lin JX, Hu B, West EE, Scharer CD, Freeman GJ, Sharpe AH, Ramalingam SS, Pellerin A, Teichgräber V, Greenleaf WJ, Klein C, Goronzy JJ, Umaña P, Leonard WJ, Smith KA, Ahmed R. PD-1 combination therapy with IL-2 modifies CD8+ T cell exhaustion program. Nature. 2022 Oct;610(7930):173-181. doi: 10.1038/s41586-022-05257-0. Epub 2022 Sep 28. PMID: 36171288; PMCID: PMC9793890.

Werner E, Gokhale A, Ackert M, Xu C, Wen Z, Roberts AM, Roberts BR, Vrailas-Mortimer A, Crocker A, Faundez V. The mitochondrial RNA granule modulates manganese-dependent cell toxicity. Mol Biol Cell. 2022 Oct 1;33(12):ar108. doi: 10.1091/mbc.E22-03-0096. Epub 2022 Aug 3. PMID: 35921164; PMCID: PMC9635304.

Zinzow-Kramer WM, Kolawole EM, Eggert J, Evavold BD, Scharer CD, Au-Yeung BB. Strong Basal/Tonic TCR Signals Are Associated with Negative Regulation of Naive CD4+ T Cells. Immunohorizons. 2022 Sep 13;6(9):671-683. doi: 10.4049/immunohorizons.2200051. PMID: 36100367.

Zhou C, Uluisik R, Rowley JW, David C, Jones CL, Scharer CD, Noetzli L, Fisher MH, Kirkpatrick GD, Bark K, Boss JM, Henry CJ, Pietras EM, Di Paola J, Porter CC. Germline ETV6 mutation promotes inflammation and disrupts lymphoid development of early hematopoietic progenitors. Exp Hematol. 2022 Aug-Sep;112-113:24-34. doi: 10.1016/j.exphem.2022.06.002. Epub 2022 Jul 6. PMID: 35803545; PMCID: PMC9885892.

Lee M, Geitgey DK, Hamilton JAG, Boss JM, Scharer CD, Spangle JM, Haynes KA, Henry CJ. Adipocyte-mediated epigenomic instability in human T-ALL cells is cytotoxic and phenocopied by epigenetic-modifying drugs. Front Cell Dev Biol. 2022 Aug 19;10:909557. doi: 10.3389/fcell.2022.909557. PMID: 36060800; PMCID: PMC9438935.

Gupta VA, Matulis SM, Barwick BG, Bog RD, Shebelut CW, Shanmugam M, Neri P, Bahlis NJ, Dhodapkar MV, Heffner LT, Hofmeister CC, Joseph NS, Lonial S, Kaufman JL, Jaye DL, Nooka AK, Boise LH. Venetoclax ex vivo functional profiling predicts improved progression-free survival. Blood Cancer J. 2022 Aug 4;12(8):115. doi: 10.1038/s41408-022-00710-9. PMID: 35927247; PMCID: PMC9352682.

Hunter R, Imbach KJ, Zhou C, Dougan J, Hamilton JAG, Chen KZ, Do P, Townsel A, Gibson G, Dreaden EC, Waller EK, Haynes KA, Henry CJ, Porter CC. B-cell acute lymphoblastic leukemia promotes an immune suppressive microenvironment that can be overcome by IL-12. Sci Rep. 2022 Jul 13;12(1):11870. doi: 10.1038/s41598-022-16152-z. PMID: 35831470; PMCID: PMC9279427.

Moser-Katz T, Gavile CM, Barwick BG, Lee KP, Boise LH. PDZ Proteins SCRIB and DLG1 Regulate Myeloma Cell Surface CD86 Expression, Growth, and Survival. Mol Cancer Res. 2022 Jul 6;20(7):1122-1136. doi: 10.1158/1541-7786.MCR-21-0681. PMID: 35380688; PMCID: PMC9262820.

Bekhbat M, Ulukaya GB, Bhasin MK, Felger JC, Miller AH. Cellular and immunometabolic mechanisms of inflammation in depression: Preliminary findings from single cell RNA sequencing and a tribute to Bruce McEwen. Neurobiol Stress. 2022 May 24;19:100462. doi: 10.1016/j.ynstr.2022.100462. PMID: 35655933; PMCID: PMC9152104.

Minten EV, Yu DS. Protocol for in vitro lysine deacetylation to test putative substrates of class III deacetylases. STAR Protoc. 2022 Apr 13;3(2):101313. doi: 10.1016/j.xpro.2022.101313. PMID: 35496786; PMCID: PMC9038758.

Boya M, Ozkaya-Ahmadov T, Swain BE, Chu CH, Asmare N, Civelekoglu O, Liu R, Lee D, Tobia S, Biliya S, McDonald LD, Nazha B, Kucuk O, Sanda MG, Benigno BB, Moreno CS, Bilen MA, McDonald JF, Sarioglu AF. High throughput, label-free isolation of circulating tumor cell clusters in meshed microwells. Nat Commun. 2022 Jun 13;13(1):3385. doi: 10.1038/s41467-022-31009-9. PMID: 35697674; PMCID: PMC9192591.

Zhang B, Xia S, Liu M, Li X, Shuai S, Tao W, Li Y, Ni JJ, Zhou W, Liao L, Xu J, Dong JT. Interruption of Klf5 acetylation in basal progenitor cells promotes luminal commitment by activating Notch signaling. J Genet Genomics. 2022 Jun;49(6):579-582. doi: 10.1016/j.jgg.2021.11.013. Epub 2021 Dec 21. PMID: 34952235.

Wielscher M, Mandaviya PR, Kuehnel B, Joehanes R, Mustafa R, Robinson O, Zhang Y, Bodinier B, Walton E, Mishra PP, Schlosser P, Wilson R, Tsai PC, Palaniswamy S, Marioni RE, Fiorito G, Cugliari G, Karhunen V, Ghanbari M, Psaty BM, Loh M, Bis JC, Lehne B, Sotoodehnia N, Deary IJ, Chadeau-Hyam M, Brody JA, Cardona A, Selvin E, Smith AK, Miller AH, Torres MA, Marouli E, Gào X, van Meurs JBJ, Graf-Schindler J, Rathmann W, Koenig W, Peters A, Weninger W, Farlik M, Zhang T, Chen W, Xia Y, Teumer A, Nauck M, Grabe HJ, Doerr M, Lehtimäki T, Guan W, Milani L, Tanaka T, Fisher K, Waite LL, Kasela S, Vineis P, Verweij N, van der Harst P, Iacoviello L, Sacerdote C, Panico S, Krogh V, Tumino R, Tzala E, Matullo G, Hurme MA, Raitakari OT, Colicino E, Baccarelli AA, Kähönen M, Herzig KH, Li S; BIOS consortium; Conneely KN, Kooner JS, Köttgen A, Heijmans BT, Deloukas P, Relton C, Ong KK, Bell JT, Boerwinkle E, Elliott P, Brenner H, Beekman M, Levy D, Waldenberger M, Chambers JC, Dehghan A, Järvelin MR. DNA methylation signature of chronic low-grade inflammation and its role in cardio-respiratory diseases. Nat Commun. 2022 May 3;13(1):2408. doi: 10.1038/s41467-022-29792-6. PMID: 35504910; PMCID: PMC9065016.

Liu M, Starenki D, Scharer CD, Silva-Sanchez A, Molina PA, Pollock JS, Cooper SJ, Arend RC, Rosenberg AF, Randall TD, Meza-Perez S. Circulating Tregs Accumulate in Omental Tumors and Acquire Adipose-Resident Features. Cancer Immunol Res. 2022 May 3;10(5):641-655. doi: 10.1158/2326-6066.CIR-21-0880. PMID: 35263766; PMCID: PMC9064962.

Dale GA, Wilkins DJ, Rowley J, Scharer CD, Tipton CM, Hom J, Boss JM, Corces V, Sanz I, Jacob J. Somatic Diversification of Rearranged Antibody Gene Segments by Intra- and Interchromosomal Templated Mutagenesis. J Immunol. 2022 May 1;208(9):2141-2153. doi: 10.4049/jimmunol.2100434. Epub 2022 Apr 13. PMID: 35418472; PMCID: PMC9047068.

Kania AK, Price MJ, George-Alexander LE, Patterson DG, Hicks SL, Scharer CD, Boss JM. H3K27me3 Demethylase UTX Restrains Plasma Cell Formation. J Immunol. 2022 Apr 15;208(8):1873-1885. doi: 10.4049/jimmunol.2100948. Epub 2022 Mar 28. PMID: 35346967; PMCID: PMC9012698.

Joyner CJ, Ley AM, Nguyen DC, Ali M, Corrado A, Tipton C, Scharer CD, Mi T, Woodruff MC, Hom J, Boss JM, Duan M, Gibson G, Roberts D, Andrews J, Lonial S, Sanz I, Lee FE. Generation of human long-lived plasma cells by developmentally regulated epigenetic imprinting. Life Sci Alliance. 2021 Dec 24;5(3):e202101285. doi: 10.26508/lsa.202101285. PMID: 34952892; PMCID: PMC8739272.

Lee M, Hamilton JAG, Talekar GR, Ross AJ, Michael L, Rupji M, Dwivedi B, Raikar SS, Boss J, Scharer CD, Graham DK, DeRyckere D, Porter CC, Henry CJ. Obesity-induced galectin-9 is a therapeutic target in B-cell acute lymphoblastic leukemia. Nat Commun. 2022 Mar 3;13(1):1157. doi: 10.1038/s41467-022-28839-y. PMID: 35241678; PMCID: PMC8894417.

Zhang H, Dammer EB, Duong DM, Danelia D, Seyfried NT, Yu DS. Quantitative proteomic analysis of the lysine acetylome reveals diverse SIRT2 substrates. Sci Rep. 2022 Mar 9;12(1):3822. doi: 10.1038/s41598-022-06793-5. PMID: 35264593; PMCID: PMC8907344.

Gohar J, Do WL, Miller-Kleinhenz J, Conneely K, Krishnamurti U, D'Angelo O, Gogineni K, Torres M, Gabram-Mendola S, McCullough LE. Neighborhood characteristics and breast tumor methylation: using epigenomics to explore cancer outcome disparities. Breast Cancer Res Treat. 2022 Feb;191(3):653-663. doi: 10.1007/s10549-021-06430-1. Epub 2022 Jan 3. PMID: 34978015.

Di Pietro A, Polmear J, Cooper L, Damelang T, Hussain T, Hailes L, O'Donnell K, Udupa V, Mi T, Preston S, Shtewe A, Hershberg U, Turner SJ, La Gruta NL, Chung AW, Tarlinton DM, Scharer CD, Good-Jacobson KL. Targeting BMI-1 in B cells restores effective humoral immune responses and controls chronic viral infection. Nat Immunol. 2022 Jan;23(1):86-98. doi: 10.1038/s41590-021-01077-y. Epub 2021 Nov 29. PMID: 34845392.

Funk CR, Wang S, Chen KZ, Waller A, Sharma A, Edgar CL, Gupta VA, Chandrakasan S, Zoine JT, Fedanov A, Raikar SS, Koff JL, Flowers CR, Coma S, Pachter JA, Ravindranathan S, Spencer HT, Shanmugam M, Waller EK. PI3Kδ/γ inhibition promotes human CART cell epigenetic and metabolic reprogramming to enhance antitumor cytotoxicity. Blood. 2022 Jan 27;139(4):523-537. doi: 10.1182/blood.2021011597. Erratum in: Blood. 2022 Sep 22;140(12):1449-1451. PMID: 35084470; PMCID: PMC8796652.

Kania AK, Guo M, Scharer CD, Boss JM. Inhibition of H3K27me3 Demethylases Promotes Plasmablast Formation. Immunohorizons. 2021 Dec 8;5(12):918-930. doi: 10.4049/immunohorizons.2000087. PMID: 34880105; PMCID: PMC10197425.

Patterson DG, Kania AK, Price MJ, Rose JR, Scharer CD, Boss JM. An IRF4-MYC-mTORC1 Integrated Pathway Controls Cell Growth and the Proliferative Capacity of Activated B Cells during B Cell Differentiation In Vivo. J Immunol. 2021 Oct 1;207(7):1798-1811. doi: 10.4049/jimmunol.2100440. Epub 2021 Sep 1. PMID: 34470852; PMCID: PMC8455452.

Corrado A, Ramonell RP, Woodruff MC, Tipton C, Wise S, Levy J, DelGaudio J, Kuruvilla ME, Magliocca KR, Tomar D, Garimalla S, Scharer CD, Boss JM, Wu H, Gumber S, Fucile C, Gibson G, Rosenberg A, Sanz I, Lee FE. Extrafollicular IgD+ B cells generate IgE antibody secreting cells in the nasal mucosa. Mucosal Immunol. 2021 Sep;14(5):1144-1159. doi: 10.1038/s41385-021-00410-w. Epub 2021 May 28. PMID: 34050324; PMCID: PMC8160425.

Kang Y, Zhou Y, Li Y, Han Y, Xu J, Niu W, Li Z, Liu S, Feng H, Huang W, Duan R, Xu T, Raj N, Zhang F, Dou J, Xu C, Wu H, Bassell GJ, Warren ST, Allen EG, Jin P, Wen Z. A human forebrain organoid model of fragile X syndrome exhibits altered neurogenesis and highlights new treatment strategies. Nat Neurosci. 2021 Aug 19. doi: 10.1038/s41593-021-00913-6. Epub ahead of print. PMID: 34413513.

Hiwa R, Nielsen HV, Mueller JL, Mandla R, Zikherman J. NR4A family members regulate T cell tolerance to preserve immune homeostasis and suppress autoimmunity. JCI Insight. 2021 Aug 3:151005. doi: 10.1172/jci.insight.151005. Epub ahead of print. PMID: 34343134.

Price MJ, Scharer CD, Kania AK, Randall TD, Boss JM. Conserved Epigenetic Programming and Enhanced Heme Metabolism Drive Memory B Cell Reactivation. J Immunol. 2021 Apr 1;206(7):1493-1504. doi: 10.4049/jimmunol.2000551. Epub 2021 Feb 24. PMID: 33627377; PMCID: PMC7988296.

Andueza A, Kumar S, Kim J, Kang DW, Mumme HL, Perez JI, Villa-Roel N, Jo H. Endothelial Reprogramming by Disturbed Flow Revealed by Single-Cell RNA and Chromatin Accessibility Study. Cell Rep. 2020 Dec 15;33(11):108491. doi: 10.1016/j.celrep.2020.108491. PMID: 33326796; PMCID: PMC7801938.

Squires KE, Gerber KJ, Tillman MC, Lustberg DJ, Montañez-Miranda C, Zhao M, Ramineni S, Scharer CD, Saha RN, Shu FJ, Schroeder JP, Ortlund EA, Weinshenker D, Dudek SM, Hepler JR. Human genetic variants disrupt RGS14 nuclear shuttling and regulation of LTP in hippocampal neurons. J Biol Chem. 2021 Jan-Jun;296:100024. doi: 10.1074/jbc.RA120.016009. Epub 2020 Nov 22. PMID: 33410399; PMCID: PMC7949046.

Vigneswaran K, Boyd NH, Oh SY, Lallani S, Boucher A, Neill SG, Olson JJ, Read RD. YAP/TAZ Transcriptional Coactivators Create Therapeutic Vulnerability to Verteporfin in EGFR-mutant Glioblastoma. Clin Cancer Res. 2021 Mar 1;27(5):1553-1569. doi: 10.1158/1078-0432.CCR-20-0018. Epub 2020 Nov 10. PMID: 33172899.

Scharer CD, Fortner KA, Dragon JA, Tighe S, Boss JM, Budd RC. Selective DNA Demethylation Accompanies T Cell Homeostatic Proliferation and Gene Regulation in Lupus-Prone lpr Mice. Immunohorizons. 2020 Oct 23;4(10):679-687. doi: 10.4049/immunohorizons.2000078. PMID: 33097564; PMCID: PMC8141279.

Babiker A, Bradley HL, Stittleburg VD, Ingersoll JM, Key A, Kraft CS, Waggoner JJ, Piantadosi A. Metagenomic sequencing to detect respiratory viruses in persons under investigation for COVID-19. J Clin Microbiol. 2020 Oct 16:JCM.02142-20. doi: 10.1128/JCM.02142-20. Epub ahead of print. PMID: 33067271.

Zhang Y, Ware MB, Zaidi MY, Ruggieri AN, Olson BM, Komar H, Farren MR, Nagaraju GP, Zhang C, Chen Z, Sarmiento JM, Ahmed R, Maithel SK, El-Rayes BF, Lesinski GB. Heat Shock Protein-90 Inhibition Alters Activation of Pancreatic Stellate Cells and Enhances the Efficacy of PD-1 Blockade in Pancreatic Cancer. Mol Cancer Ther. 2021 Jan;20(1):150-160. doi: 10.1158/1535-7163.MCT-19-0911. Epub 2020 Oct 9. PMID: 33037138; PMCID: PMC7790996..

Bai J, Bruner DW, Fedirko V, Beitler JJ, Zhou C, Gu J, Zhao H, Lin IH, Chico CE, Higgins KA, Shin DM, Saba NF, Miller AH, Xiao C. Gut Microbiome Associated with the Psychoneurological Symptom Cluster in Patients with Head and Neck Cancers. Cancers (Basel). 2020 Sep 6;12(9):2531. doi: 10.3390/cancers12092531. PMID: 32899975; PMCID: PMC7563252..

Baurley JW, Kjærsgaard A, Zwick ME, Cronin-Fenton DP, Collin LJ, Damkier P, Hamilton-Dutoit S, Lash TL, Ahern TP. Bayesian Pathway Analysis for Complex Interactions. Am J Epidemiol. 2020 Dec 1;189(12):1610-1622. doi: 10.1093/aje/kwaa130. PMID: 32639515; PMCID: PMC7822643.

Scharer CD, Patterson DG, Mi T, Price MJ, Hicks SL, Boss JM. Antibody-secreting cell destiny emerges during the initial stages of B-cell activation. Nat Commun. 2020 Aug 10;11(1):3989. doi: 10.1038/s41467-020-17798-x. PMID: 32778653; PMCID: PMC7417592.

Inglis GAS, Zhou Y, Patterson DG, Scharer CD, Han Y, Boss JM, Wen Z, Escayg A. Transcriptomic and epigenomic dynamics associated with development of human iPSC-derived GABAergic interneurons. Hum Mol Genet. 2020 Aug 29;29(15):2579-2595. doi: 10.1093/hmg/ddaa150. PMID: 32794569; PMCID: PMC7471504.

Goldsmith DR, Bekhbat M, Le NA, Chen X, Woolwine BJ, Li Z, Haroon E, Felger JC. Protein and gene markers of metabolic dysfunction and inflammation together associate with functional connectivity in reward and motor circuits in depression. Brain Behav Immun. 2020 Aug;88:193-202. doi: 10.1016/j.bbi.2020.05.013. Epub 2020 May 5. PMID: 32387344; PMCID: PMC7415617.

Bekhbat M, Treadway MT, Goldsmith DR, Woolwine BJ, Haroon E, Miller AH, Felger JC. Gene signatures in peripheral blood immune cells related to insulin resistance and low tyrosine metabolism define a sub-type of depression with high CRP and anhedonia. Brain Behav Immun. 2020 Aug;88:161-165. doi: 10.1016/j.bbi.2020.03.015. Epub 2020 Mar 18. PMID: 32198016; PMCID: PMC7415632.

Obeng RC, Arnold RS, Ogan K, Master VA, Pattaras JG, Petros JA, Osunkoya AO. Molecular characteristics and markers of advanced clear cell renal cell carcinoma: Pitfalls due to intratumoral heterogeneity and identification of genetic alterations associated with metastasis. Int J Urol. 2020 Jul 8. doi: 10.1111/iju.14302. Epub ahead of print. PMID: 32638444.

Xiao C, Eldridge RC, Beitler JJ, Higgins KA, Chico CE, Felger JC, Wommack EC, Knobf T, Saba NF, Shin DM, Bruner DW, Miller AH. Association Among Glucocorticoid Receptor Sensitivity, Fatigue, and Inflammation in Patients With Head and Neck Cancer. Psychosom Med. 2020 Jun;82(5):508-516. doi: 10.1097/PSY.0000000000000816. PMID: 32515926; PMCID: PMC7905992..

Slavotinek A, Misceo D, Htun S, Mathisen L, Frengen E, Foreman M, Hurtig JE, Enyenihi L, Sterrett MC, Leung SW, Schneidman-Duhovny D, Estrada-Veras J, Duncan JL, Haaxma CA, Kamsteeg EJ, Xia V, Beleford D, Si Y, Douglas G, Treidene HE, van Hoof A, Fasken MB, Corbett AH. Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness. Hum Mol Genet. 2020 Aug 3;29(13):2218-2239. doi: 10.1093/hmg/ddaa108. PMID: 32504085; PMCID: PMC7399534..

Li Z, Sun C, Tao S, Osunkoya AO, Arnold RS, Petros JA, Zu X, Moreno CS. The JNK inhibitor AS602801 Synergizes with Enzalutamide to Kill Prostate Cancer Cells In Vitro and In Vivo and Inhibit Androgen Receptor Expression. Transl Oncol. 2020 Apr;13(4):100751. doi: 10.1016/j.tranon.2020.100751. Epub 2020 Mar 18. PMID: 32199273; PMCID: PMC7082632.

Collins CM, Scharer CD, Murphy TJ, Boss JM, Speck SH. Murine gammaherpesvirus infection is skewed toward Igλ+ B cells expressing a specific heavy chain V-segment. PLoS Pathog. 2020 Apr 30;16(4):e1008438. doi: 10.1371/journal.ppat.1008438. PMID: 32353066; PMCID: PMC7217478.

Grimsley-Myers CM, Isaacson RH, Cadwell CM, Campos J, Hernandes MS, Myers KR, Seo T, Giang W, Griendling KK, Kowalczyk AP. VE-cadherin endocytosis controls vascular integrity and patterning during development. J Cell Biol. 2020 May 4;219(5):e201909081. doi: 10.1083/jcb.201909081. PMID: 32232465; PMCID: PMC7199849.

Hayward SL, Scharer CD, Cartwright EK, Takamura S, Li ZT, Boss JM, Kohlmeier JE. Environmental cues regulate epigenetic reprogramming of airway-resident memory CD8+ T cells. Nat Immunol. 2020 Mar;21(3):309-320. doi: 10.1038/s41590-019-0584-x. Epub 2020 Jan 17. PMID: 31953534; PMCID: PMC7044042.

Majumder P, Lee JT, Rahmberg AR, Kumar G, Mi T, Scharer CD, Boss JM. A super enhancer controls expression and chromatin architecture within the MHC class II locus. J Exp Med. 2020 Feb 3;217(2):e20190668. doi: 10.1084/jem.20190668. PMID: 31753848; PMCID: PMC7041702.

Farren MR, Sayegh L, Ware MB, Chen HR, Gong J, Liang Y, Krasinskas A, Maithel SK, Zaidi M, Sarmiento JM, Kooby D, Patel P, El-Rayes B, Shaib W, Lesinski GB. Immunologic alterations in the pancreatic cancer microenvironment of patients treated with neoadjuvant chemotherapy and radiotherapy. JCI Insight. 2020 Jan 16;5(1):e130362. doi: 10.1172/jci.insight.130362. PMID: 31830001; PMCID: PMC7030821.

Jenks SA, Cashman KS, Zumaquero E, Marigorta UM, Patel AV, Wang X, Tomar D, Woodruff MC, Simon Z, Bugrovsky R, Blalock EL, Scharer CD, Tipton CM, Wei C, Lim SS, Petri M, Niewold TB, Anolik JH, Gibson G, Eun-Hyung Lee F, Boss JM, Lund FE, Sanz I. Distinct Effector B Cells Induced by Unregulated Toll-like Receptor 7 Contribute to Pathogenic Responses in Systemic Lupus Erythematosus. Immunity. 2020 Jan 14;52(1):203. doi: 10.1016/j.immuni.2019.12.005. Erratum for: Immunity. 2018 Oct 16;49(4):725-739.e6. PMID: 31940271; PMCID: PMC6993874.

Donaldson KJ, Wu WF, Skelton H, Markand S, Ferdous S, Sellers J, Chrenek MA, Gefke I, Kim SM, Rha J, Liao KL, Grossniklaus HE, Jiang Y, Kong J, Boatright JH, Nickerson JM. Analysis of Damage and Wound Healing in the Retinal Pigmented Epithelium. Adv Exp Med Biol. 2019;1185:425-430. doi: 10.1007/978-3-030-27378-1_70. PMID: 31884649; PMCID: PMC7362297.

Ferdous S, Grossniklaus HE, Boatright JH, Nickerson JM. Characterization of LSD1 Expression Within the Murine Eye. Invest Ophthalmol Vis Sci. 2019 Nov 1;60(14):4619-4631. doi: 10.1167/iovs.19-26728. PMID: 31675426; PMCID: PMC6827424.

Zoeller EL, Pedro B, Konen J, Dwivedi B, Rupji M, Sundararaman N, Wang L, Horton JR, Zhong C, Barwick BG, Cheng X, Martinez ED, Torres MP, Kowalski J, Marcus AI, Vertino PM. Genetic heterogeneity within collective invasion packs drives leader and follower cell phenotypes. J Cell Sci. 2019 Oct 9;132(19):jcs231514. doi: 10.1242/jcs.231514. PMID: 31515279; PMCID: PMC6803364.

Haines RR, Scharer CD, Lobby JL, Boss JM. LSD1 Cooperates with Noncanonical NF-κB Signaling to Regulate Marginal Zone B Cell Development. J Immunol. 2019 Oct 1;203(7):1867-1881. doi: 10.4049/jimmunol.1900654. Epub 2019 Sep 6. PMID: 31492745; PMCID: PMC6761012.

Price MJ, Hicks SL, Bradley JE, Randall TD, Boss JM, Scharer CD. IgM, IgG, and IgA Influenza-Specific Plasma Cells Express Divergent Transcriptomes. J Immunol. 2019 Oct 15;203(8):2121-2129. doi: 10.4049/jimmunol.1900285. Epub 2019 Sep 9. PMID: 31501259; PMCID: PMC6783370.

Chandrasekaran S, Sasaki M, Scharer CD, Kissick HT, Patterson DG, Magliocca KR, Seykora JT, Sapkota B, Gutman DA, Cooper LA, Lesinski GB, Waller EK, Thomas SN, Kotenko SV, Boss JM, Moreno CS, Swerlick RA, Pollack BP. Phosphoinositide 3-Kinase Signaling Can Modulate MHC Class I and II Expression. Mol Cancer Res. 2019 Dec;17(12):2395-2409. doi: 10.1158/1541-7786.MCR-19-0545. Epub 2019 Sep 23. PMID: 31548239; PMCID: PMC7339488.

Scharer CD, Blalock EL, Mi T, Barwick BG, Jenks SA, Deguchi T, Cashman KS, Neary BE, Patterson DG, Hicks SL, Khosroshahi A, Eun-Hyung Lee F, Wei C, Sanz I, Boss JM. Epigenetic programming underpins B cell dysfunction in human SLE. Nat Immunol. 2019 Aug;20(8):1071-1082. doi: 10.1038/s41590-019-0419-9. Epub 2019 Jul 1. PMID: 31263277; PMCID: PMC6642679.

Byun PK, Zhang C, Yao B, Wardwell-Ozgo J, Terry D, Jin P, Moberg K. The Taiman Transcriptional Coactivator Engages Toll Signals to Promote Apoptosis and Intertissue Invasion in Drosophila. Curr Biol. 2019 Sep 9;29(17):2790-2800.e4. doi: 10.1016/j.cub.2019.07.012. Epub 2019 Aug 8. PMID: 31402304; PMCID: PMC6736757.

Moran JD, Kim HH, Li Z, Moreno CS. SOX4 regulates invasion of bladder cancer cells via repression of WNT5a. Int J Oncol. 2019 Aug;55(2):359-370. doi: 10.3892/ijo.2019.4832. Epub 2019 Jun 26. PMID: 31268162; PMCID: PMC6615919.

Siegel BI, King TZ, Rupji M, Dwivedi B, Carter AB, Kowalski J, MacDonald TJ. Host Genome Variation is Associated with Neurocognitive Outcome in Survivors of Pediatric Medulloblastoma. Transl Oncol. 2019 Jul;12(7):908-916. doi: 10.1016/j.tranon.2019.03.004. Epub 2019 May 9. PMID: 31078964; PMCID: PMC6515414.

Zumaquero E, Stone SL, Scharer CD, Jenks SA, Nellore A, Mousseau B, Rosal-Vela A, Botta D, Bradley JE, Wojciechowski W, Ptacek T, Danila MI, Edberg JC, Bridges SL Jr, Kimberly RP, Chatham WW, Schoeb TR, Rosenberg AF, Boss JM, Sanz I, Lund FE. IFNγ induces epigenetic programming of human T-bethi B cells and promotes TLR7/8 and IL-21 induced differentiation. Elife. 2019 May 15;8:e41641. doi: 10.7554/eLife.41641. PMID: 31090539; PMCID: PMC6544433.

Stone SL, Peel JN, Scharer CD, Risley CA, Chisolm DA, Schultz MD, Yu B, Ballesteros-Tato A, Wojciechowski W, Mousseau B, Misra RS, Hanidu A, Jiang H, Qi Z, Boss JM, Randall TD, Brodeur SR, Goldrath AW, Weinmann AS, Rosenberg AF, Lund FE. T-bet Transcription Factor Promotes Antibody-Secreting Cell Differentiation by Limiting the Inflammatory Effects of IFN-γ on B Cells. Immunity. 2019 May 21;50(5):1172-1187.e7. doi: 10.1016/j.immuni.2019.04.004. Epub 2019 May 7. PMID: 31076359; PMCID: PMC6929688.

Barwick BG, Neri P, Bahlis NJ, Nooka AK, Dhodapkar MV, Jaye DL, Hofmeister CC, Kaufman JL, Gupta VA, Auclair D, Keats JJ, Lonial S, Vertino PM, Boise LH. Multiple myeloma immunoglobulin lambda translocations portend poor prognosis. Nat Commun. 2019 Apr 23;10(1):1911. doi: 10.1038/s41467-019-09555-6. PMID: 31015454; PMCID: PMC6478743.

Haines RR, Barwick BG, Scharer CD, Majumder P, Randall TD, Boss JM. The Histone Demethylase LSD1 Regulates B Cell Proliferation and Plasmablast Differentiation. J Immunol. 2018 Nov 1;201(9):2799-2811. doi: 10.4049/jimmunol.1800952. Epub 2018 Sep 19. PMID: 30232138; PMCID: PMC6200601.

Sharma NV, Pellegrini KL, Ouellet V, Giuste FO, Ramalingam S, Watanabe K, Adam-Granger E, Fossouo L, You S, Freeman MR, Vertino P, Conneely K, Osunkoya AO, Trudel D, Mes-Masson AM, Petros JA, Saad F, Moreno CS. Identification of the Transcription Factor Relationships Associated with Androgen Deprivation Therapy Response and Metastatic Progression in Prostate Cancer. Cancers (Basel). 2018 Oct 11;10(10):379. doi: 10.3390/cancers10100379. PMID: 30314329; PMCID: PMC6210624.

Jenks SA, Cashman KS, Zumaquero E, Marigorta UM, Patel AV, Wang X, Tomar D, Woodruff MC, Simon Z, Bugrovsky R, Blalock EL, Scharer CD, Tipton CM, Wei C, Lim SS, Petri M, Niewold TB, Anolik JH, Gibson G, Lee FE, Boss JM, Lund FE, Sanz I. Distinct Effector B Cells Induced by Unregulated Toll-like Receptor 7 Contribute to Pathogenic Responses in Systemic Lupus Erythematosus. Immunity. 2018 Oct 16;49(4):725-739.e6. doi: 10.1016/j.immuni.2018.08.015. Epub 2018 Oct 9. Erratum in: Immunity. 2020 Jan 14;52(1):203. PMID: 30314758; PMCID: PMC6217820.

Xiao C, Beitler JJ, Higgins KA, Wommack EC, Saba NF, Shin DM, Bruner DW, Miller AH, Cole S. Differential regulation of NF-kB and IRF target genes as they relate to fatigue in patients with head and neck cancer. Brain Behav Immun. 2018 Nov;74:291-295. doi: 10.1016/j.bbi.2018.09.013. Epub 2018 Sep 11. PMID: 30217537; PMCID: PMC6289813.

Swimm A, Giver CR, DeFilipp Z, Rangaraju S, Sharma A, Ulezko Antonova A, Sonowal R, Capaldo C, Powell D, Qayed M, Kalman D, Waller EK. Indoles derived from intestinal microbiota act via type I interferon signaling to limit graft-versus-host disease. Blood. 2018 Dec 6;132(23):2506-2519. doi: 10.1182/blood-2018-03-838193. Epub 2018 Sep 26. PMID: 30257880; PMCID: PMC6284212.

Kennedy EM, Powell DR, Li Z, Bell JSK, Barwick BG, Feng H, McCrary MR, Dwivedi B, Kowalski J, Dynan WS, Conneely KN, Vertino PM. Galactic Cosmic Radiation Induces Persistent Epigenome Alterations Relevant to Human Lung Cancer. Sci Rep. 2018 Apr 30;8(1):6709. doi: 10.1038/s41598-018-24755-8. PMID: 29712937; PMCID: PMC5928241.

Scharer CD, Barwick BG, Guo M, Bally APR, Boss JM. Plasma cell differentiation is controlled by multiple cell division-coupled epigenetic programs. Nat Commun. 2018 Apr 27;9(1):1698. doi: 10.1038/s41467-018-04125-8. PMID: 29703886; PMCID: PMC5923265.

Guo M, Price MJ, Patterson DG, Barwick BG, Haines RR, Kania AK, Bradley JE, Randall TD, Boss JM, Scharer CD. EZH2 Represses the B Cell Transcriptional Program and Regulates Antibody-Secreting Cell Metabolism and Antibody Production. J Immunol. 2018 Feb 1;200(3):1039-1052. doi: 10.4049/jimmunol.1701470. Epub 2017 Dec 29. PMID: 29288200; PMCID: PMC5780247.

Struebing FL, Wang J, Li Y, King R, Mistretta OC, English AW, Geisert EE. Differential Expression of Sox11 and Bdnf mRNA Isoforms in the Injured and Regenerating Nervous Systems. Front Mol Neurosci. 2017 Nov 2;10:354. doi: 10.3389/fnmol.2017.00354. PMID: 29209164; PMCID: PMC5701613.

Gavile CM, Barwick BG, Newman S, Neri P, Nooka AK, Lonial S, Lee KP, Boise LH. CD86 regulates myeloma cell survival. Blood Adv. 2017 Nov 16;1(25):2307-2319. doi: 10.1182/bloodadvances.2017011601. PMID: 29296880; PMCID: PMC5729629.

White MC, Steel J, Lowen AC. Heterologous Packaging Signals on Segment 4, but Not Segment 6 or Segment 8, Limit Influenza A Virus Reassortment. J Virol. 2017 May 12;91(11):e00195-17. doi: 10.1128/JVI.00195-17. PMID: 28331085; PMCID: PMC5432880.

Bilir B, Sharma NV, Lee J, Hammarstrom B, Svindland A, Kucuk O, Moreno CS. Effects of genistein supplementation on genome‑wide DNA methylation and gene expression in patients with localized prostate cancer. Int J Oncol. 2017 Jul;51(1):223-234. doi: 10.3892/ijo.2017.4017. Epub 2017 May 24. PMID: 28560383; PMCID: PMC5467777.

Xiao C, Miller AH, Felger J, Mister D, Liu T, Torres MA. Depressive symptoms and inflammation are independent risk factors of fatigue in breast cancer survivors. Psychol Med. 2017 Jul;47(10):1733-1743. doi: 10.1017/S0033291717000150. Epub 2017 Feb 14. PMID: 28193310.

Pellegrini KL, Sanda MG, Patil D, Long Q, Santiago-Jiménez M, Takhar M, Erho N, Yousefi K, Davicioni E, Klein EA, Jenkins RB, Karnes RJ, Moreno CS. Evaluation of a 24-gene signature for prognosis of metastatic events and prostate cancer-specific mortality. BJU Int. 2017 Jun;119(6):961-967. doi: 10.1111/bju.13779. Epub 2017 Feb 11. PMID: 28107602; PMCID: PMC5444982.

Scharer CD, Bally AP, Gandham B, Boss JM. Cutting Edge: Chromatin Accessibility Programs CD8 T Cell Memory. J Immunol. 2017 Mar 15;198(6):2238-2243. doi: 10.4049/jimmunol.1602086. Epub 2017 Feb 8. PMID: 28179496; PMCID: PMC5341694.

Butler KM, da Silva C, Shafir Y, Weisfeld-Adams JD, Alexander JJ, Hegde M, Escayg A. De novo and inherited SCN8A epilepsy mutations detected by gene panel analysis. Epilepsy Res. 2017 Jan;129:17-25. doi: 10.1016/j.eplepsyres.2016.11.002. Epub 2016 Nov 6. PMID: 27875746; PMCID: PMC5321682.

Barwick BG, Scharer CD, Bally APR, Boss JM. Plasma cell differentiation is coupled to division-dependent DNA hypomethylation and gene regulation. Nat Immunol. 2016 Oct;17(10):1216-1225. doi: 10.1038/ni.3519. Epub 2016 Aug 8. PMID: 27500631; PMCID: PMC5157049.

Wigington CP, Morris KJ, Newman LE, Corbett AH. The Polyadenosine RNA-binding Protein, Zinc Finger Cys3His Protein 14 (ZC3H14), Regulates the Pre-mRNA Processing of a Key ATP Synthase Subunit mRNA. J Biol Chem. 2016 Oct 21;291(43):22442-22459. doi: 10.1074/jbc.M116.754069. Epub 2016 Aug 25. PMID: 27563065; PMCID: PMC5077184.

Scharer CD, Blalock EL, Barwick BG, Haines RR, Wei C, Sanz I, Boss JM. ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells. Sci Rep. 2016 Jun 1;6:27030. doi: 10.1038/srep27030. PMID: 27249108; PMCID: PMC4888756.

Rahman K, Desai C, Iyer SS, Thorn NE, Kumar P, Liu Y, Smith T, Neish AS, Li H, Tan S, Wu P, Liu X, Yu Y, Farris AB, Nusrat A, Parkos CA, Anania FA. Loss of Junctional Adhesion Molecule A Promotes Severe Steatohepatitis in Mice on a Diet High in Saturated Fat, Fructose, and Cholesterol. Gastroenterology. 2016 Oct;151(4):733-746.e12. doi: 10.1053/j.gastro.2016.06.022. Epub 2016 Jun 21. PMID: 27342212; PMCID: PMC5037035.

Kowalski J, Dwivedi B, Newman S, Switchenko JM, Pauly R, Gutman DA, Arora J, Gandhi K, Ainslie K, Doho G, Qin Z, Moreno CS, Rossi MR, Vertino PM, Lonial S, Bernal-Mizrachi L, Boise LH. Gene integrated set profile analysis: a context-based approach for inferring biological endpoints. Nucleic Acids Res. 2016 Apr 20;44(7):e69. doi: 10.1093/nar/gkv1503. Epub 2016 Jan 29. PMID: 26826710; PMCID: PMC4838358.

Wingo AP, Almli LM, Stevens JS, Klengel T, Uddin M, Li Y, Bustamante AC, Lori A, Koen N, Stein DJ, Smith AK, Aiello AE, Koenen KC, Wildman DE, Galea S, Bradley B, Binder EB, Jin P, Gibson G, Ressler KJ. DICER1 and microRNA regulation in post-traumatic stress disorder with comorbid depression. Nat Commun. 2015 Dec 3;6:10106. doi: 10.1038/ncomms10106. Erratum in: Nat Commun. 2016;7:10958. Stevens, Jennifer J [Corrected to Stevens, Jennifer S]. PMID: 26632874; PMCID: PMC4686835.

Scharer CD, Choi NM, Barwick BG, Majumder P, Lohsen S, Boss JM. Genome-wide CIITA-binding profile identifies sequence preferences that dictate function versus recruitment. Nucleic Acids Res. 2015 Mar 31;43(6):3128-42. doi: 10.1093/nar/gkv182. Epub 2015 Mar 9. PMID: 25753668; PMCID: PMC4381081.

Huang B, Wei W, Wang G, Gaertig MA, Feng Y, Wang W, Li XJ, Li S. Mutant huntingtin downregulates myelin regulatory factor-mediated myelin gene expression and affects mature oligodendrocytes. Neuron. 2015 Mar 18;85(6):1212-26. doi: 10.1016/j.neuron.2015.02.026. PMID: 25789755; PMCID: PMC4366619.

Long Q, Xu J, Osunkoya AO, Sannigrahi S, Johnson BA, Zhou W, Gillespie T, Park JY, Nam RK, Sugar L, Stanimirovic A, Seth AK, Petros JA, Moreno CS. Global transcriptome analysis of formalin-fixed prostate cancer specimens identifies biomarkers of disease recurrence. Cancer Res. 2014 Jun 15;74(12):3228-37. doi: 10.1158/0008-5472.CAN-13-2699. Epub 2014 Apr 8. PMID: 24713434; PMCID: PMC4058362.

Smith AK, Conneely KN, Pace TW, Mister D, Felger JC, Kilaru V, Akel MJ, Vertino PM, Miller AH, Torres MA. Epigenetic changes associated with inflammation in breast cancer patients treated with chemotherapy. Brain Behav Immun. 2014 May;38:227-36. doi: 10.1016/j.bbi.2014.02.010. Epub 2014 Feb 28. PMID: 24583204; PMCID: PMC4312666.

Mueller PW, Lyons J, Kerr G, Haase CP, Isett RB. Standard enrichment methods for targeted next-generation sequencing in high-repeat genomic regions. Genet Med. 2013 Nov;15(11):910-1. doi: 10.1038/gim.2013.119. PMID: 24196000.