Data Analysis Tutorials

This section provides resources for Proteomics data analysis. EIPC is not responsible for veracity of actual data analysis or interpretation.

If you have any questions or feedbacks, please email us at eipc@emory.edu.

Download MaxQuant
Download Perseus

MaxQuant and Perseus only work on Windows.

MaxQuant: Database search set up

MaxQuant search output (pdf)
Proteome Discoverer search output (pdf)

Mass Spectrometry Data Analysis with Excel

LFQ data analysis using Perseus

Immunoprecipitation: Enrichment analysis with Perseus

Phosphoenrichment analysis with Perseus

This App is developed by Dr. Eric Dammer!!

Pairwise Comparison (Output: ANOVA p-value and difference of mean) and Volcano plot.

Link for the Shiny App